API Reference

Core Functions and Utilities

`anyvar.anyvar`	Full-service interface to converting, validating, and registering biological sequence variation.
`anyvar.core.metadata`	Define types and classes for metadata, i.e. additional descriptions on top of stored objects.
`anyvar.core.objects`	Provide types, classes, and functions for objects stored by AnyVar.
`anyvar.core.categorical_variants`	Provide core typing/structure for categorical variants.

Support processing and manipulation of VCF objects.

`anyvar.storage.base`	Provide PostgreSQL-based storage implementation.
`anyvar.storage.postgres`	Provide PostgreSQL-based storage implementation.
`anyvar.storage.duckdb`	Provide DuckDB-based storage implementation.
`anyvar.storage.mapper_registry`	Central registry for all object mappers.
`anyvar.storage.mappers`	Object mappers for converting between VRS models and database entities.
`anyvar.storage.orm`	SQLAlchemy ORM models for AnyVar database schema.
`anyvar.storage.no_db`	Stateless storage implementation (no persistence).

`anyvar.translate.base`	Provide base properties for Translator classes.
`anyvar.translate.vrs_python`	Normalize incoming variation descriptions with the VRS-Python library.
`anyvar.translate.register`	Provide shared variation registration logic for use by REST API and Celery workers.

`anyvar.mapping.liftover`	Defines functions used to lift over variants between GRCh37 & GRCh38
`anyvar.mapping.projection_models`	Define data models for use in variant projection
`anyvar.mapping.protocols`	Provide a public interface to mapping models and functions